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Bioin­for­matics Pipeline Develo­pment with Nextflow (May 27–29, 2024)

In a nutshell

  • Learn the funda­mental best-practices of bioin­for­matic pipeline develo­pment
  • Under­stand how workflow management systems can accelerate your research
  • Use state-of-the-art, open source software to make complex analyses routine
  • Perform your own custom analysis pipelines using Nextflow!

Scope and Topics:

The purpose of the workshop is to introduce the concepts of bioin­for­matic pipeline develo­pment through the context of the open source Workflow Management System (WMS) Nextflow. The parti­ci­pants will be trained in the scripting, confi­gu­ration and execution of example analysis pipelines based on current industry best-practices, and learn how to share them with other users. Finally, the parti­ci­pants will apply every­thing they have learned by imple­menting their own analysis pipelines from the ground up.

By the end of the workshop all attendees will be enabled to build their own scalable, repro­du­cible bioin­for­matic pipelines which can be run locally, on high-perfor­mance computing clusters or even in the cloud. The course layout has been adapted to the needs of beginners in the field of compu­ta­tional biology and allows scien­tists with little or no background in software develo­pment to get a first hands-on experience in this new and fast-evolving area of expertise. This instructor-led live online workshop has been newly designed for an engaging, inter­active online learning experience.

Website: https://www.ecseq.com/workshops/workshop_2024-04-Bioinformatics-Pipeline-Development-with-Nextflow-Online-Course