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Exciting Positions in CeMM International PhD Program in Molecular Medicine in Vienna, Austria

The next PhD Program at CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences in Vienna will start in October 2018. We offer 15 fully funded PhD positions and are looking for exceptionally motivated PhD candidates with a keen interest in genomics, medicine and interdisciplinary teamwork.

 The 2018 CeMM PhD Program will focus on the thematic areas of Infection, Immunity, Metabolism, Cancer and Network Medicine. These areas are built on the pillars of epigenetics and genome integrity, bioinformatics and systems biology, chemical biology, high-throughput genetics, genomics and proteomics, and molecular and cell biology.

 CeMM is an international research institute of the Austrian Academy of Sciences. The mission of CeMM is to achieve maximum scientific innovation in molecular medicine to improve healthcare. At CeMM, an international and creative team of scientists and medical doctors pursues free-minded, basic life science research in a large and vibrant hospital environment of outstanding medical tradition and practice. CeMM operates in a unique mode of super-cooperation, connecting biology with medicine, experiments with computation, discovery with translation, and science with society and the arts. The goal of CeMM is to pioneer the science that nurtures the precise, personalized, predictive and preventive medicine of the future.

CeMM is located at the center of one of the largest medical campuses in Europe, within walking distance to Vienna’s historical city center. Vienna is repeatedly ranked as the world’s best city to live in and is a United Nations city with a large international, English-speaking community. The official language at CeMM is English, and more than 40 different nationalities are currently represented at the institute.

The successful candidates will be awarded a generous scholarship, which covers all research costs, university fees, work-related travel expenses, salary and health insurance for 4 years. The PhD degree will be awarded by the Medical University of Vienna.


To be eligible to enroll in the CeMM PhD Program, all candidates are required to have a final degree (minimum requirement is a four-year Bachelor’s degree) in medicine, biology, chemistry, bioinformatics, computer science, engineering, physics, mathematics or a similar subject. The working language at CeMM is English, i.e. excellent written and oral communication skills in English are mandatory.

Apply now!

The application deadline is 2nd February 2018.

For further information about the PhD Program, and to apply through the online system, please refer to our website:


Max Planck Institute EVA Leipzig: Computational population genetics

A PhD student and a postdoc position in


are available in the newly founded research group of Benjamin Peter at the Max-Planck Institute for Evolutionary Anthropology in Leipzig. Our main research goal is to develop and apply population genetic methods that use genetic diversity patterns through space and time to learn about neutral and selective evolutionary processes in archaic and modern humans, in particular leveraging the large number of Neandertals and Denisovans being sequenced at the institute. The exact projects of the candidates will be flexible, but will be in the context of the research in the group and at the institute. We welcome candidates with a strong quantitative / data science background. Previous work in population genetics (theoretical or analytical), experience with large-scale genomic datasets, low-coverage DNA data and strong programming skills are a plus but not required.

The Department of Evolutionary Genetics at the Max Planck Institute for Evolutionary Anthropology is a leader in ancient-DNA genomics and offers a lively, stimulating, and highly collaborative atmosphere. The Institute is very international and English speaking. It is located in Leipzig, a nice and affordable city of 500,000 habitants that is a major cultural center in central Europe (one hour away from Berlin and three from Prague).

Please send applications and informal inquiries directly to Diese E-Mail-Adresse ist vor Spambots geschützt! Zur Anzeige muss JavaScript eingeschaltet sein!. To apply please send a brief cover letter, curriculum vitae, and contact information for at least two references as a single PDF. Applicants for the PhD-student position require a Masters degree. Applications will be considered on a rolling basis, and should be received before December 31, 2017 to guarantee consideration. Please see and to learn more about the group and institute.

Werkstudenten Medical Analytics & Data Mining / Machine Learning (m/w) [arvato CRM Healthcare GmbH]

Ihre Herausforderungen

Für die Unterstützung unserer Mitarbeiter/-innen im Team "Medical Data Science" am Standort München suchen wir

 ab 1.1.2018 für 20h/Woche

studentische Mitarbeiter für Forschungsprojekte (m/w).

 Ihre Tätigkeiten umfassen hierbei:

•             führende Mitarbeit in einem Kooperationsprojekt mit dem Helmholtzzentrum

•             medizinische und ökonomische Analysen auf der Forschungsdatenbank

•             fachliche Weiterentwicklung von Clusteralgorithmen für die Analyse von multinomialen Datenreihen

•             Veröffentlichung der Ergebnisse in einschlägigen Fachzeitschriften und Konferenzen.


Ihr Profil

•             Sie sind proaktiv und ein guter Teamplayer

•             ein fortgeschrittenes Studium der Informatik/Statistik/Bioinformatik

•             gute Datenbankkenntnisse (MySQL/TSQL) und Programmiererfahrung (Java, Perl, Python, R oder vergleichbares)

•             Interesse am Gesundheitswesen

•             Data Mining Kenntnisse sind von Vorteil (R/Weka/Knime)

•             sehr gute und Deutsch- und Englischkenntnisse in Wort und Schrift


Wir über uns

Hinter Arvato CRM Solutions stehen zahlreiche Services, die Sie täglich nutzen: Immer dann, wenn Kunden zum

Beispiel einen Flug umbuchen, einen Telefonvertrag verlängern oder die im Onlineshop bestellten Schuhe reklamieren

wollen, ist die Chance groß, dass wir als Dienstleister hinter den Kulissen tätig sind.


Im Namen unserer Auftraggeber pflegt Arvato CRM Solutions heute Beziehungen zu über 600 Millionen Konsumenten

und Geschäftskunden auf fünf Kontinenten in über 35 Sprachen. Am Telefon, per E-Mail und Brief oder auch im Live-

Chat sowie über Social Media unterstützen rund 43.000 Mitarbeiter an über 100 Standorten unsere Auftraggeber jeden

Tag dabei, exzellenten Kundenservice anzubieten. Arvato CRM Solutions ist Teil des Dienstleistungsunternehmens

Arvato - einer 100-prozentigen Tochter der internationalen Mediengruppe Bertelsmann.


Wir bieten Ihnen:

•             eine anspruchsvolle und verantwortungsvolle Tätigkeit in einem internationalen Team

•             eine Vergütung über öffentlichem Tarif und flexible Arbeitszeiten

•             die Möglichkeit, neben dem Studium praktische Erfahrungen zu sammeln und die im Studium erworbenen


Kenntnisse einzubringen und zu vertiefen

•             eine Referenz für den (späteren) Berufseinstieg und ein Netzwerk für die zukünftige Karriere


Wir haben Ihr Interesse geweckt?

Senden Sie Ihre Bewerbung an

Diese E-Mail-Adresse ist vor Spambots geschützt! Zur Anzeige muss JavaScript eingeschaltet sein!

Diese E-Mail-Adresse ist vor Spambots geschützt! Zur Anzeige muss JavaScript eingeschaltet sein!


oder per Post an:

arvato CRM Healthcare GmbH

z.Hd. Jennifer Heinrich

Wohlrabedamm 32

13629 Berlin


Wir freuen uns auf Ihre Bewerbung!

Postdoctoral position in bioinformatics of long noncoding RNAs [Institute for Computational Genomics, RWTH Aachen University]

The Institute for Computational Genomics, RWTH Aachen University
performs cutting edge research on computational and genomic methods
for understanding regulatory and epigenetic processes driving cell
differentiation and diseases. In this project, we are particularly
interested in studying RNA-DNA interactions as mechanisms of
transcriptional control. For example, we have recently shown how the
long-noncoding RNA HOTAIR interacts with DNA via triple helices to
control the expression of stem cell differentiation (Kalwa et al.,
NAR, 2016).

 We are looking for a postdoc candidate to work on sequence analysis
algorithms for detection of RNA-DNA triple helices and for analysis of
novel target sequencing protocols, which capture triple helix forming
RNA and DNA molecules. This project will be performed in collaboration
with cell biologists of the Medical Faculty, RWTH and of the German
Centre of Cancer Research (DKFZ), Heidelberg.

 Applicants should hold a Ph.D. in Bioinformatics or Computer Science.
Experience in the analysis of biological sequences and regulatory
genomics is required. The candidate should have solid programming
skills (C, Python and/or R) and acquaintance with Unix/Linux.
Experience with high performance computing is a plus. The working
language of the group is English. The position is a full time position
to be filled as soon as possible. The candidate will have the
possibility to perform his habilitation. The salary corresponds to
level 13 TV-L. Interested candidates should send a brief statement, of
research interests, CV and the names of three references to
Diese E-Mail-Adresse ist vor Spambots geschützt! Zur Anzeige muss JavaScript eingeschaltet sein!.

RWTH Aachen is one of the members of the German Excellence Initiative
and one of the leading technical universities in Europe. It is located
at the Euroregio tri-border region neighboring Netherlands and
Belgium, which provides unique life and work opportunities. We
particularly welcome and encourage applications from women, disabled
people and ethnic minority groups, recognizing they are
underrepresented across RWTH Aachen University. The principles of fair
and open competition apply and appointments will be made on merit.

Wissenschaftlicher Mitarbeiter (w/m) im Bereich Bioinformatik [ Westfälische Wilhelms-Universität]

Wir suchen:

Im Rahmen der DFG-geförderten klinischen Forschergruppe "Male Germ Cells" am Institut für Medizinische Informatik der Westfälischen Wilhelms-Universität (Direktor: Prof. Dr. Martin Dugas) zum nächstmöglichen Zeitpunkt zunächst befristet auf 3 Jahre mit der Möglichkeit der Verlängerung einen

Wissenschaftlicher Mitarbeiter (w/m) im Bereich Bioinformatik
Kennziffer 13957

vollzeitbeschäftigt mit 38,5 Wochenstunden
Verg.  je nach Qualifikation und Aufgabenübertragung bis zu TV-L E 14

In dem Teilprojekt „Male Germ Cells: from Genes to Function“ beschäftigen sich Wissenschaftler aus sieben verschiedenen Kliniken und Einrichtungen der Universität Münster mit den Ursachen zur Infertilität des Mannes. Ziel ist es, die Zahl der Männer ohne Diagnose für ihre Unfruchtbarkeit zu halbieren.
In Zusammenarbeit mit dem Institut für Humangenetik (Prof. Dr. Frank Tüttelmann) sollen mit Hilfe bioinformatischer Methoden genetische Unterschiede und deren Auswirkungen auf die Zeugungsfähigkeit untersucht werden. Ein Workflow zur integrierten Analyse von OMICs-Daten soll implementiert werden. Weitere Informationen zum Projekt sind zu finden unter:

Ihr Profil:

    Abgeschlossenes Hochschulstudium der Bioinformatik, Medizinischen Informatik, Mathematik oder Statistik
    Interesse für Auswertung genomischer Daten
    Idealerweise Erfahrung mit „Next Generation Sequencing Data“-Analysen
    Sehr gute Programmierkenntnisse in mind. einer Sprache (R und/oder Java)
    Sehr gute Englischkenntnisse
    Verantwortungsbewusstes, kollegiales und ergebnisorientiertes Arbeiten
    Hohe Motivation und Leistungsbereitschaft

Wir bieten Ihnen einen attraktiven, anspruchsvollen Arbeitsplatz in einem aufgeschlossenen, interdisziplinären Team sowie eine sehr gute Arbeitsatmosphäre. Bei Vorliegen der entsprechenden Voraussetzungen besteht die Möglichkeit zur Promotion bzw. Habilitation.

Weitere Informationen zum Institut für Medizinische Informatik (IMI) finden Sie unter:

Bei Rückfragen wenden Sie sich bitte an:
Herrn Prof. Martin Dugas, Tel.: 0251 83-55261 (martin.dugas(at)­ukmuenster(dot)­de) oder an Herrn Prof. Frank Tüttelmann, Tel.: 0251 83-55411 (frank.tuettelmann(at)­ukmuenster(dot)­de).

Wir freuen uns auf Ihre Bewerbung und bitten Sie, diese unter Angabe der Kennziffer bis zum 30.11.2017 an die Verwaltung des Universitätsklinikums Münster, Albert-Schweitzer-Campus 1, Gebäude D5, 48149 Münster oder bewerbung(at)­ukmuenster(dot)­de zu senden.

Das UKM unterstützt die Vereinbarkeit von Beruf und Familie und ist daher seit 2010 als familienbewusstes Unternehmen zertifiziert. Es besteht grundsätzlich die Möglichkeit der Teilzeitbeschäftigung. Die Bewerbung von Frauen wird begrüßt; im Rahmen der gesetzlichen Vorschriften werden Frauen bevorzugt eingestellt. Schwerbehinderte werden bei gleicher Eignung besonders berücksichtigt.


PhD Position in Bioinformatics/Biostatistics, Institute of Clinical Molecular Biology (IKMB), Christian Albrechts University, (CAU) in Kiel, Germany

The University Medical Center Schleswig-Holstein is one of the largest university hospitals in Europe with more than 80
clinics and institutes. We provide top research at the interface of medicine, science and technology and maintain research
co-operations with universities all over the world. The research focus of the Institute of Clinical Molecular Biology (IKMB) is on the identification of genetic factors and
mechanisms in complex inflammatory diseases, using high-throughput technologies and state-of-the-art computational
methods. The IKMB at the Christian Albrechts University in Kiel is home to three senior research groups as well as four junior groups and over 120

We are seeking competent support to strengthen our team in Kiel, ideally starting from 1 November 2017 or later. The initial
contract is limited to two years with the possibility of extension. The position to be filled is funded by the BMBF (German
Federal Ministry of Education and Research) systems medicine network “GB-XMAP: A systems methodology to assess the risk
of gut-brain cross diseases by characterizing expressional changes”.

What you can expect:
You will primarily evaluate existing machine learning techniques for the analysis of high-dimensional genomic data and will
conduct scientific studies for inflammatory barrier diseases such as ulcerative colitis, based on state-of-the-art next generation
sequencing and array data.

What we expect:
We are seeking a highly motivated and qualified candidate (m/f) with an academic degree (master’s degree or diploma) in
(bio-)informatics, (bio-)statistics, molecular biology or related areas, pronounced analytical and theoretical abilities and solid
knowledge of programming (R and/or Python/Perl/C++). Experience in bioinformatics/biological information processing or
molecular biology is advantageous. You should enjoy working on research questions as part of a team. As you will work in an
international environment, strong communication skills in English both spoken and written are also necessary.

What we offer:
You will join an exciting multidisciplinary research environment with various opportunities to be part of the national and
international scientific community. Doctoral students (m/f) are encouraged to attend international conferences and visit
cooperation partners. We offer flexible working hours and various opportunities to reconcile work and family life.
Salary will be, depending on qualifications, according to the German salary scale 13 TV-L (65%).
The UKSH has been certified as a family-friendly institution and is committed to further improve the compatibility of work
and family life. The University Medical Center Schleswig-Holstein is an equal opportunity employer. People with disabilities will
be given preference in case of equal qualifications.

Does that sound interesting?
For more details on the position, please contact Prof. Dr. David Ellinghaus (phone: +49-431-500-15131). Questions on administrative
aspects can be addressed to Jana Gisdepski (phone: +49-451-500-11192). More information on the University Medical
Center Schleswig-Holstein and the Institute of Clinical Molecular Biology (IKMB) can be obtained online at
karriere and

We are looking forward to your application. Please submit your application until 30 November 2017, indicating your earliest
possible starting date as well as the reference number 20170890, via our online portal:

15 PhD positions available in the Marie Skłodowska-Curie European Training Network EpiDiverse

EpiDiverse - Epigenetic Diversity in Ecology - is a Marie Skłodowska-Curie Innovative Training Network aimed at the study of epigenetic variation in wild plant species. This network joins academic groups from ecology, molecular (epi)genetics and bioinformatics with life science companies to explore epigenetic mechanisms and their adaptive relevance in natural plant populations.

The cross-disciplinary research program investigates how epigenetic mechanisms, in interaction with environments and transposable elements, contribute to variation that is relevant for the adaptive capacity of plants. By applying epigenomic research tools to a selection of different wild plants (including long-lived trees, annual and asexually reproducing species) we investigate how epigenetic mechanisms as well as their ecological relevance differs between plant species. Understanding the epigenetic contribution to adaptive capacity will help to predict species responses to global warming and can open new directions for sustainable agriculture and crop breeding.

The EpiDiverse consortium will train 15 Early Stage Researchers to become expert eco-epigeneticists, equipping them with the interdisciplinary skills - molecular, (epi)genomic, ecological and bioinformatics - to successfully tackle this new research area. EpiDiverse training will emphasize empirical and informatics skills to become fluent and creative in extracting knowledge from big ‘omics data in natural contexts.

EpiDiverse is funded by the EU Horizon 2020 programme and involves 12 partners from academia, non-profit organizations and industry located in the Netherlands, Germany, France, Spain, Czech Republic, Italy and Austria.

EpiDiverse Projects:

RP01: De novo assembly and functional annotation of the genome of Populus nigra
PhD Supervisor(s): Michele Morgante, Emanuele De Paoli, Federica Cattonaro

RP02: The role of repetitive DNA and genome structural variation in mediating environment-epigenome interactions in Populus nigra
PhD Supervisor(s): Michele Morgante, Emanuele De Paoli, Federica Cattonaro

RP03: Inferring genomic information from bisulfite sequencing data populations
PhD Supervisor(s): David Langenberger, Peter Stadler

RP04: Integration of DNA methylation, genetic patterns, and functional annotation in non-model species
PhD Supervisor(s): Ivo Grosse, Carolin Delker, Peter Stadler

RP05: Epigenome-wide association studies
PhD Supervisor(s): Stefan Rensing & Noe Fernandez-Pozo

RP06: Natural DNA methylation variation in Fragaria vesca populations along climatological gradient
PhD Supervisor(s): Vítek Latzel, Zuzana Münzbergová

RP07: Natural DNA methylation variation in European Thlaspi arvensepopulations
PhD Supervisor(s): Oliver Bossdorf, Niek Scheepens

RP08: Natural DNA methylation variation in clonal and outcrossing European Populus nigra
PhD Supervisor(s): Lars Opgenoorth & Katrin Heer

RP09: Life history effects on epigenetic inheritance
Supervisor(s): Koen Verhoeven & Wim van der Putten

RP10: Uncovering the epigenetic component of plant-herbivore interactions
PhD Supervisor(s): Conchita Alonso & Mónica Medrano

RP11: Heritable stress-induced genetic and epigenetic changes in Strawberry
Supervisor(s): Etienne Bucher, Béatrice Denoyes

RP12: Epigenetic response to stress in natural variants of pennycress (Thlaspi arvense)
PhD Supervisor(s): Claude Becker, Ortrun Mittelsten Scheid

RP13: Epigenetic contribution to phenotypic plasticity in Populus nigra
Supervisor(s): Koen Verhoeven & Wim van der Putten

RP14: Transgenerational epigenetic effects: role of small RNAs
PhD Supervisor(s): Detlef Weigel & Anjar Wibowo

RP15: Investigating the plant mobilome responsiveness under stress
PhD Supervisor(s): Marie Mirouze & Alain Ghesquière

Please find more information and apply on:

Open PhD position at ecSeq Bioinformatics: Inferring genomic information from bisulfite sequencing data

DNA methylation variants can arise spontaneously, they can be under genetic control or they can be induced by the environment. In plants, some DNA methylation variants are stable across many generations whereas other variants are very transient. A good understanding of the transgenerational dynamics of DNA methylation variants is essential to understand their impact on heritable traits and their effect on adaptation. Current insight in the transgenerational dynamics of DNA methylation is limited to very few model plant species, but it is predicted that these dynamics are not constant among different plants. For instance, plant reproduction mode can have a large effect because asexual reproduction bypasses some of the epigenetic resetting mechanisms that normally occur during sexual reproduction. Adaptive differences in transgenerational stability may also differ between species with different life spans or from habitats of different environmental predictability.

Your PhD Project
In this project, we aim to investigate differences in DNA methylation dynamics between species with different life history traits. In close collaboration with other bioinformaticians and biologists, a best-practice pipeline for the analysis of plant bisulfite data will be developed, benchmarked, and provided to be applied to the Next-Generation Sequencing (NGS) data generated in the frame of different EpiDiverse projects. In addition, novel algorithms will be devised and implemented to better detect DNA methylation variants and search for important methylation haplotypes to better understand the epigenetic regulation. The special constellation of working at a bioinformatics company in very strong cooperation with the chair of bioinformatics at the university offers the unique possibility of gaining benefits from both: The clearly structured style of the work in a company will help implementing novel ideas from academia in the light of recent publications, resulting in a strong focus and high productivity.

Your Qualifications
We seek a bright, highly motivated, and enthusiastic bioinformatician, or computer scientist with significant interest in solving biologically motivated questions. Excellent programming skills with knowledge of at least one of the following programming languages are mandatory: Python, R, or C/C++/C#. A strong background in Next-Generation Sequencing (NGS) and/or (epi)genetics data analyses are an advantage. A high standard of spoken and written English is required, as are good quantitative and analytical capabilities, excellent interpersonal and communication skills, and the ability to work independently as well as part of a team.

If interested, please visit


POSTDOC position at New England Biolabs (NEB) in experimental and Computational Biology

NEB-research has an opening for a highly motivated Postdoctoral Associate in experimental and Computational Biology. The major topic of the team is to bridge the large enzyme discovery and optimization efforts with the latest massive parallel sequencing technologies. With the central aim to develop innovative large scale applications, the team research involves the elaboration of both experimental methodologies and data analysis strategies inherent to such applications. The outcomes of these efforts are twofold: first, the perspective of a major leap into existing or novel technologies and second, the unique abilities to address biological questions

Your primary focus will be on developing screening technologies to uniquely identify and sequence organisms harboring non-canonical nucleotides in microbiomes. Indeed, a number of microorganisms notably phages have been using non-canonical nucleotides in their genomes to evade the bacteria immune system. The discovery of such organisms has been seldom and so far no systematic investigation of the number of organisms with modified DNA nor the nature of such modifications has been conducted on a microbiome.  This study will provide information on the prevalence and pathways involved. You will be working both on the experimental and analysis front of the project.

Skills & Experience
• Ph.D. or equivalent in Computational biology, molecular biology, biochemistry or related field.
• Expertise in large scale data analysis and programming. Expertise in microbiome studies is a plus.
• Expertise in working with nucleotides and nucleic acid.
• Collaborative minded.
• Good interdisciplinary communication skills.

If interested, please contact Dr. Laurence Ettwiller : Diese E-Mail-Adresse ist vor Spambots geschützt! Zur Anzeige muss JavaScript eingeschaltet sein!

Research Associate, Center for Bioinformatics, UHH

Universität Hamburg invites applications for a Research Associate in accordance with Section
28 subsection 1 of the Hamburg Higher Education Act (Hamburgisches Hochschulgesetz,
HmbHG). The position commences on January 1st, 2018.

It is remunerated at the salary level TV-L 13 and calls for 50% of standard work hours per week.*
The fixed-term nature of this contract is based upon Section 2 of the Academic Fixed-Term Labor
Contract Act (Wissenschaftszeitvertragsgesetz, WissZeitVG). The initial fixed term is three

The University aims to increase the number of women in research and teaching and explicitly
encourages qualified women to apply. Equally qualified female applicants will receive preference
in accordance with the Hamburg Equality Act (Hamburgisches Gleichstellungsgesetz,

Associates will be expected primarily to conduct research and teach. The associate will have the
opportunity to pursue further academic qualifications, in particular a doctoral dissertation. At
least one-third of set working hours will be made available for the associate's own academic

Specific Duties:
The Research Associate will actively support the research and teaching activities of the Center
for Bioinformatics (ZBH) in close conjunction with the University's Master Programme in
Bioinformatics. Research activities will be focusing on the development and application of
methods in cheminformatics and computer-aided molecular design. Research Associates will
teach an equivalent of two hours (2 SWS) per week during term time.

We are looking for highly-motivated individuals aiming to obtain a PhD degree at the interface
of the life sciences and informatics. Candidates should have a Diploma or Master's degree in:

• bioinformatics
• cheminformatics
• informatics with a life science background
• chemistry with a focus on physical/theoretical or organic chemistry
* Full-time positions currently comprise 39 hours per week.
• biology/structural biology or
• similar qualifications.

Knowledge in the area of chemical biology/organic chemistry/structural biology is a
requirement. Knowledge of Python, Java, R or other programming languages as well as
machine learning are beneficial. The Research Associate will participate in various national and
international research projects, and good communication skills in English are therefore
expected. Good communication skills in German are beneficial.

Severely disabled applicants will receive preference over equally qualified non-disabled applicants.

For further information, please contact Prof. Johannes Kirchmair or consult our website at

Applications should include a cover letter, curriculum vitae, and copies of degree certificate(s).
The application deadline is 15.11.2017. Please send applications to: Diese E-Mail-Adresse ist vor Spambots geschützt! Zur Anzeige muss JavaScript eingeschaltet sein!.