bioinformatik.de - /Software/Unix/

Category bioinformatik.de / Software / Unix /

Vigyaan is an electronic workbench for computational biology and computational chemistry. VigyaanCD is based on KNOPPIX.
http://www.vigyaancd.org/

Molecular Biology related programs for Linux.
http://bioinformatics.org/software/index.php3

Biocomputing and Linux
http://ourworld.compuserve.com/homepages/pvosta/pcrbioc.htm

Bioinformatics Data Management and Analysis
http://www.gcg.com/seqstore/index.html

Collection of informations and links of free Software running under Linux.
http://lem.ch.unito.it/chem_linux.html

Debian packages in Biology.
http://www.pasteur.fr/recherche/unites/sis/debian/biology-en.html

EMBOSS (European Molecular Biology Open Software Suite) is a collaboration of European biological software developers which aims to integrate a range of currently available packages and tools for sequence analysis into a general program.
http://www.sanger.ac.uk/Software/EMBOSS/

ESSA is an integrated and interactive computer tool for analysing RNA secondary structure.
http://www-bia.inra.fr/T/essa/Doc/essa_home.html

HMMTOP: Prediction of transmembrane helices and topology of proteins.
http://www.enzim.hu/hmmtop/

Image is able to process gels from a wide variety of scanning technologies and has been tested on various fingerprinting protocols, producing normalized bands and normalized gel images as output.
http://www.sanger.ac.uk/Software/Image/

Linux Software Encyclopedia: Biochemtistry, Bioinformatics
http://stommel.tamu.edu/~baum/linuxlist/linuxlist/node9.html#biochemistry

Metatool is a program for studying stuctural properties of metabolic networks by using methods of linear and convex algebra.
http://www.bioinf.mdc-berlin.de/projects/metabolic/metatool/

Molecular Applications Group is a software-based science company focusing on computational solutions for predicting gene function
http://www.mag.com/index.html

MPSA - Multiple Protein Sequence Analysis.
http://mpsa-pbil.ibcp.fr/

SEALS (A System for Easy Analysis of Lots of Sequences) is a software package expressly designed for large-scale research projects in bioinformatics.
http://www.ncbi.nlm.nih.gov/Walker/SEALS/index.html

Tandem repeats finder: a program to analyze DNA sequences.
http://c3.biomath.mssm.edu/trf.html

The Linux for Biotechnology cdrom project.
http://www.randomfactory.com/lfb/lfb.html

The Systems Biology Workbench (SBW) is a modular, broker-based, message-passing framework for simplified communication between applications that aid in research in systems biology.
http://sbw.sourceforge.net/

VISTA - VISualization Tool for Alignments. VISTA is an integrated system for global alignment and visualization, designed for comparative genomic analysis.
http://www-gsd.lbl.gov/vista/

VMD is a molecular visualization program that provides real-time interactive manipulation of molecules in 3D.
http://www.ks.uiuc.edu/Research/vmd/

W2H - WWW Interface to the GCG Sequence Analysis Software Tools.
http://www.w2h.dkfz-heidelberg.de/