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Category bioinformatik.de / Software / Software for Microarrays /

AMADA - Analyzing Microarray Data.
http://web.hku.hk/~xxia/software/AMADA.htm

Array-Pro Analyzer is an indispensable tool for the nascent microarray and high-throughput screening research efforts fueling the genomics, proteomics, drug discovery and bioinformatics revolution.
http://www.mediacy.com/arraypro

ArrayMaker v1.8.5.
http://cmgm.stanford.edu/pbrown/mguide/software.html

Bioconductor is an open source and open development software project for the analysis and comprehension of genomic data.
http://www.bioconductor.org/

CLUSFAVOR - Factor Analysis of Cluster-specific Gene Expression Levels From cDNA Microarrays.
http://mbcr.bcm.tmc.edu/genepi/

Clustering Software XCluster.
http://genome-www.stanford.edu/%7Esherlock/cluster.html

Dynametrics - dynamic data mining system with graphical direct manipulation as the main UI.
http://chi-square-works.com/

Genesis - a platform independent Java package of tools to simultaneously visualize and analyze a whole set of gene expression experiments.
http://genome.tugraz.at/

IconoClust - the microarray imaging tool, low budget, get 11 MB download, database conectivity, TWAIN image acqusition, optimized for HTS.
http://www.clondiag.com/products/sw/iconoclust

Microarray Software from Michael Eisen's lab at the Lawrence Berkeley National Lab (LBNL).
http://rana.lbl.gov/EisenSoftware.htm

MicroArray Suite is Scanalytics new image analysis software product used specifically for extracting and visualizing DNA microarray data.
http://scanalytics.com/product/hts/microarray.html

Partek Pro is used for statistical analysis and visualization of microarray data.
http://www.partek.com/

PARTISAN arrayLIMS is designed for managing all pertinent issues in a microarray life cycle such as array design, array generation, biochemical reactions, detection, data analysis and data mining.
http://www.clondiag.com/products/sw/partisan/

SPSS Science provides the leading data mining workbench Clementine as well as scientific software designed for data analysis, graphic presentation, statistics, Enzyme Kinetics, Ligand Binding and image analysis.
http://www.spssscience.com/

The Short Time-series Expression Miner (STEM) is a Java program for clustering, comparing, and visualizing short time series gene expression data that is fully integrated with the Gene Ontology.
http://www.cs.cmu.edu/~jernst/stem/