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Category bioinformatik.de / Software / Mac / Phylogenetic Analysis /

Phylogeny programs cross-referenced by method and system.
http://evolution.genetics.washington.edu/phylip/software.xref.html

CAIC - a comparative analysis package for the Apple Macintosh
http://evolve.zps.ox.ac.uk/

Clann : Constructing Supertrees from partially-overlapping datasets. The purpose of the program is to implement methods of determining the most suitable phylogenetic supertree, given a set of input source trees.
http://bioinf.may.ie/software/clann/

GeneTree is an experimental program for comparing gene and species trees.
http://taxonomy.zoology.gla.ac.uk/rod/genetree/genetree.html

MacClade is a computer program for phylogenetic analysis. It also provides many tools for entering and editing data and phylogenies, and for producing tree diagrams and charts.
http://phylogeny.arizona.edu/macclade/macclade.html

MacTaxon - A new database system for plant taxonomy.
http://www.kuleuven.ac.be/bio/sys/mactaxon/index.html

PAML - Phylogenetic Analysis by Maximum Likelihood.
http://abacus.gene.ucl.ac.uk/ziheng/paml.html#GetPAML

PAUP*: Phylogenetic Analysis Using Parsimony and other Methods.
http://paup.csit.fsu.edu/

PHYLIP Home Page - Phylogenieprogramm
http://evolution.genetics.washington.edu/phylip.html

Phylodendron is an application for drawing phylogenetic trees, used in evolutionary biology.
ftp://iubio.bio.indiana.edu/molbio/java/apps/trees/phylodendron-doc.html

PSeq-Gen - Protein Sequence-Generator: An application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees.
http://evolve.zoo.ox.ac.uk/software/PSeq-Gen/main.html

RECOMBINE - RECOMBINE fits a model which has a single population of constant size with a single recombination rate across all sites. It can accomodate either plain DNA or RNA data or SNP (Single Nucleotide Polymorphism) data.
http://evolution.genetics.washington.edu/lamarc/recombine.html

Seq-Gen - Sequence-Generator: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees.
http://evolve.zoo.ox.ac.uk/software/Seq-Gen/main.html

The PUZZLE Software: Maximum likelihood analysis for nucleotide, amino acid, and two-state data.
http://www.tree-puzzle.de/

TreeEdit - Phylogenetic Tree Editor. An application for organising, viewing and manipulating sets of phylogenetic trees.
http://evolve.zoo.ox.ac.uk/software/TreeEdit/main.html

TREEFINDER computes phylogenetic trees from DNA sequences. A very fast maximum likelihood program by Gangolf Jobb.
http://www.treefinder.de

TreeMap is an experimental program for comparing host and parasite trees.
http://taxonomy.zoology.gla.ac.uk/rod/treemap.html

TREEVIEW : Tree drawing software for Apple Macintosh and Windows
http://taxonomy.zoology.gla.ac.uk/rod/treeview.html

Weighbor: Weighted Neighbor Joining - Weighbor is a weighted version of Neighbor Joining that gives significantly less weight to the longer distances in the distance matrix.
http://www.t10.lanl.gov/billb/weighbor/