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Category bioinformatik.de / Software / Gene Prediction /

A Bibliography on computational gene recognition (Wentian Li).
http://www.nslij-genetics.org/gene/

GeneMachine is an integrated tool intended to perform both comparative and predictive gene identification techniques in a single run.
http://genome.nhgri.nih.gov/genemachine/

GeneMark - A family of gene prediction programs provided by Mark Borodovsky's Bioinformatics Group at the Georgia Institute of Technology, Atlanta, Georgia.
http://opal.biology.gatech.edu/GeneMark/

GENSCAN - Identification of complete structures in genomic DNA.
http://genes.mit.edu/GENSCAN.html

Glimmer (Gene Locator and Interpolated Markov Modeler) is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea.
http://www.tigr.org/softlab/glimmer/glimmer.html

GlimmerM is a gene finder developed specifically for small eukaryotes.
http://www.tigr.org/softlab/glimmerm/

GrailEXP is a software package that predicts exons, genes, promoters, polyas, CpG islands, EST similarities, and repetitive elements within DNA sequence.
http://grail.lsd.ornl.gov/grailexp/

PROCRUSTES: Gene Recognition via Spliced Alignment
http://www-hto.usc.edu/software/procrustes/index.html

WEBGENE - Tools for prediction and analysis of protein-coind gene structure.
http://www.itba.mi.cnr.it/webgene/

Wise2: Intelligent algorithms for DNA searches.
http://www.sanger.ac.uk/Software/Wise2/