bioinformatik.de - /Evolution_and_Phylogeny/
Category bioinformatik.de / Evolution and Phylogeny /
Phylogeny programs cross-referenced by method and system.
http://evolution.genetics.washington.edu/phylip/software.xref.html
Compare - for the phylogenetic analysis of comparative data.
http://compare.bio.indiana.edu/
CONSEL: a program for assessing the confidence of phylogenetic tree selection.
http://www.is.titech.ac.jp/~shimo/prog/consel/
Digital Taxonomy - An Information Resource on Biodiversity Data Management.
http://www.geocities.com/RainForest/Vines/8695/
Evolution of Parallel Cellular Machines.
http://lslwww.epfl.ch/~moshes/cp.html
Molecular Evolutionary Computer Programs distributed from Dr. Masatoshi Nei's Lab.
http://www.bio.psu.edu/People/Faculty/Nei/Lab/Programs.html
Molecular Systematics and Evolution Course. The Natural History Museum, London, and NUI Maynooth, Ireland.
http://www.bioinf.org/molsys/index.html
NCBI's Clusters of Orthologous Groups (COGs) were delineated by comparing protein sequences encoded in 8 complete genomes,representing 6 major phylogenetic lineages.
http://www.ncbi.nlm.nih.gov/COG/
PAL: A Java library for molecular evolution and phylogenetics.
http://www.pal-project.org/
PHYLIP Home Page - Phylogenieprogramm
http://evolution.genetics.washington.edu/phylip.html
Phylogenetics Resources - list of sites useful for scientists in this field.
http://www.ucmp.berkeley.edu/subway/phylogen.html
SeqEvolver simulates the evolution of a collection of protein or DNA sequences, with user-defined substitution rates and evolution time.
http://fasta.bioch.virginia.edu/seqevolver/
Software from Evolutionary Biology, Molecular Phylogenetics and Epidemiology, Department of Zoology, Oxford.
http://evolve.zoo.ox.ac.uk/
SplitsTree: Analyzing and Visualizing Evolutionary Data
http://www-ab.informatik.uni-tuebingen.de/software/splits/welcome_en.html
The PUZZLE Software: Maximum likelihood analysis for nucleotide, amino acid, and two-state data.
http://www.tree-puzzle.de/
This directory contains software for inference of evolutionary history using molecular sequence data, including programs for parallelisation of maximum likelihood problems, construction of phylogenetic supertrees, analysing codon usage data and identifyin
http://bioinf.may.ie/software/
TREEFINDER computes phylogenetic trees from DNA sequences. A very fast maximum likelihood program by Gangolf Jobb.
http://www.treefinder.de
Webinterface for Phylip programs.
http://bioweb.pasteur.fr/seqanal/phylogeny/phylip-uk.html
