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Chloroplast Transit Peptide Prediction
http://www.cbs.dtu.dk/services/ChloroP/

ELM - The eucaryotic linear motif resource for functional sites in proteins.
http://elm.eu.org/

Prediction servers - Center for Biological Sequence Analysis
http://www.cbs.dtu.dk/services/

Predotar - a prediction service for identifying putative mitochondrial an plastid targeting sequences.
http://www.inra.fr/Internet/Produits/Predotar/

PSORT is a computer program for the prediction of protein localization sites in cells.
http://psort.nibb.ac.jp/

Sigfind - Signal Peptide Prediction Server (Human).
http://www.stepc.gr/~synaptic/sigfind.html

The SignalP WWW server predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms: Gram-positive prokaryotes, Gram-negative prokaryotes, and eukaryotes.
http://www.cbs.dtu.dk/services/SignalP/

WWW Signal Scan: Find and list homologies of published signal sequences with the input DNA sequence.
http://bimas.dcrt.nih.gov:80/molbio/signal/