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Category bioinformatik.de / Databases / Proteins /

PredictProtein is a service for sequence analysis, and structure prediction.
http://cubic.bioc.columbia.edu/predictprotein/

AllAll: Related peptide sequences. Starting from a set of related peptides, the AllAll command determines the relationship of each peptide sequence versus the others(all-against-all matching) and uses these results to construct phylogenetic trees.
http://cbrg.inf.ethz.ch/Server/AllAll.html

BCM Search Launcher: General Protein Sequence/Pattern Searches: Blastp, Fasta, Prosite, Blocks, Swissprot etc.
http://searchlauncher.bcm.tmc.edu/seq-search/protein-search.html

BCM Search Launcher: Species-Specific Protein Sequence Searches.
http://searchlauncher.bcm.tmc.edu/seq-search/protein-search-genomes.html

Blast, European Bioinformatics Institute.
http://www2.ebi.ac.uk/bic_sw/

C. elegans Protein Database WormPep.
http://www.sanger.ac.uk/Projects/C_elegans/wormpep/

CATH - The CATH database is a hierarchical domain classification of protein structures in the Brookhaven protein databank.
http://www.biochem.ucl.ac.uk/bsm/cath/

COPE - Cytokines Online Pathfinder Encyclopaedia .
http://www.copewithcytokines.de/

DIP (Database of Interacting Proteins) is a database of protein pairs that are known to interact with each other.
http://dip.doe-mbi.ucla.edu/

DOMO is a database of homologous protein domain families.
http://www.infobiogen.fr/services/domo/

ExPASy - The Expasy proteomics Web server of the Swiss Institute of Bioinformatics (SIB).
http://www.expasy.ch

GenBank/National Center for Biotechnology Information
http://www.ncbi.nlm.nih.gov/

GPSDB (Gene and Protein Synonyms Database) is a collection of gene and protein names, organized by species. This free thesaurus allows to query PubMed directly for related literature.
http://biomint.pharmadm.com/

Histone Sequence Database
http://genome.nhgri.nih.gov/histones/

HOMSTRAD - a database of protein structure alignments of homologous families.
http://www-cryst.bioc.cam.ac.uk/~homstrad/

IMGT, the international ImMunoGeneTics database, is a high-quality integrated database specialising in Immunoglobulins, T cell receptors and Major Histocompatibility Complex molecules of all vertebrate species, created in 1989 by Marie-Paule Lefranc.
http://imgt.cines.fr:8104/

INFOGENE - DataBases of Genome known and Predicted Genes and Proteins
http://genomic.sanger.ac.uk/db.shtml

KEGG: Kyoto Encyclopedia of Genes and Genomes
http://www.genome.ad.jp/kegg/

munich information center for protein sequences
http://mips.gsf.de/

PDB - Protein Data Bank. Research Collaboratory for Structural Bioinformatics.
http://www.rcsb.org/pdb/

Pfam (Protein families database of alignments and HMMs) is a large collection of multiple sequence alignments
http://pfam.wustl.edu/

Prediction servers - Center for Biological Sequence Analysis
http://www.cbs.dtu.dk/services/

Prosite - Database of protein families and domains.
http://www.expasy.ch/prosite/

Protein Hydrophilicity/Hydrophobicity Search and Comparison Server
http://bioinformatics.weizmann.ac.il/hydroph/

Protein Topology - This web site is devoted to protein structural topology and protein topology cartoons.
http://www3.ebi.ac.uk/tops/

PROW Guides are authoritative structured reviews on human proteins and protein families. PROW is the WWW resource which promotes the development of such scholarly content by scientific experts. PROW is funded by NCI and supported by NCBI.
http://www.ncbi.nlm.nih.gov/prow/

SCOP - Structural Classification of Proteins.
http://scop.berkeley.edu/

Sequence Retrieval System - Network Browser for Databanks in Molecular Biology.
http://www.embl-heidelberg.de/srs5/

SLoop - A Database of Super Secondary Fragments.
http://www-cryst.bioc.cam.ac.uk/~sloop/

SWISSPROT - Annotated protein sequence database and TrEMBL - Computer-annotated supplement to SWISS-PROT.
http://www.expasy.ch/sprot/

The Biology WorkBench is a revolutionary web-based tool for biologists. The WorkBench allows biologists to search many popular protein and nucleic acid sequence databases.
http://biology.ncsa.uiuc.edu/

The GeneFIND Web Server provides on-line family identification of query sequences and keyword search for information retrieval of protein families.
http://pir.georgetown.edu/gfserver/Welcome.html

The ProDom protein domain database consists of an automatic compilation of homologous domains.
http://protein.toulouse.inra.fr/prodom.html

The Protein Information Resource (PIR) maintains the International Protein Sequence Database.
http://pir.georgetown.edu/pir/

The SYSTERS protein sequence cluster set consists of the classification of all sequences from SWISS-PROT and PIR into disjoint protein family clusters and hierarchically into superfamily and subfamily clusters.
http://systers.molgen.mpg.de/

Toplogy-based Protein Structure Comparison. This page offers a service for fast topology-based structural comparison of a user-supplied target protein domain with the TOPS Atlas (a representative set of 3000 domains), or the entire PDB.
http://www3.ebi.ac.uk/tops/compare.html