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Database of Macromolecular Movements with Associated Tools for Geometric Analysis.
http://bioinfo.mbb.yale.edu/MolMovDB/

LPFC - A Library of Protein Family Cores
http://WWW-SMI.Stanford.EDU/projects/helix/LPFC//

OLDERADO - On Line Database of Ensemble Representatives And DOmains
http://neon.chem.le.ac.uk/olderado/

scop: Structural Classification of Proteins.
http://scop.mrc-lmb.cam.ac.uk/scop/

SLoop - A Database of Super Secondary Fragments.
http://www-cryst.bioc.cam.ac.uk/~sloop/

The Image Library of Biological Macromolecules is aimed at a better dissemination of information on three-dimensional biopolymer structures.It provides access to all structure entries deposited at the Protein Data Bank or at the Nucleic Acid Database.
http://www.imb-jena.de/IMAGE.html